There’s something magical about the way the kitchen fills with the aroma of garlic and basil, instantly transporting me to an Italian trattoria. My latest culinary adventure brings together simplicity and flavor in a delightful twist on dinner—introducing the Pesto Chicken Stuffed Spaghetti Squash. This healthy dinner option is not only low-carb and keto-friendly but also a family-approved favorite, perfect for those busy weeknights when you crave something wholesome yet satisfying. Picture tender shredded chicken mingling with homemade pesto and melty cheese, all nestled inside perfectly roasted spaghetti squash. It’s a dish that feels indulgent while keeping health in mind. Curious to know how to bring this vibrant meal to your table? Let’s dive in!

Why is this dish a must-try?
Flavorful ingredients shine: The rich combination of homemade pesto, tender chicken, and creamy cheeses creates an explosion of taste that will leave you craving more. Healthy Twist: Enjoy a low-carb, keto-friendly meal that feels indulgent yet nutritious. Quick and Easy: Perfect for busy weeknights, this dish can be prepped and on the table in less than an hour. Family Favorite: Everyone loves it—kids and adults will savor every bite! Versatile Options: Switch it up with shrimp or add veggies for even more nutrition. Pair it with a side salad for a complete meal or try it with Cheesy Chicken Spaghetti to switch up your dinner routine!
Pesto Chicken Stuffed Spaghetti Squash Ingredients
For the Squash
• Large spaghetti squash – Acts as a fantastic, low-carb alternative to pasta—choose one that feels heavy for its size for the best flavor.
For the Filling
• Chicken breast (1 pound) – Provides lean protein; you can substitute with cooked turkey or shrimp for variety.
• Salt and pepper – Essential for enhancing overall flavor; use to taste.
• Pesto sauce (1 cup) – Infuses vibrant flavor and aroma; homemade is delightful, but store-bought pesto works well too when time is tight.
For the Cheesy Topping
• Parmesan cheese (1/4 cup) – Contributes a nutty flavor and creaminess; nutritional yeast can be a great substitute for a vegan option.
• Mozzarella cheese (1/4 cup) – Offers melty texture and rich taste; consider a dairy-free alternative if preferred.
This Pesto Chicken Stuffed Spaghetti Squash is deliciously flexible, making it a go-to recipe for health-conscious home cooks!
Step‑by‑Step Instructions for Pesto Chicken Stuffed Spaghetti Squash
Step 1: Preheat Your Oven
Begin by preheating your oven to 375°F (190°C). This temperature is essential for roasting the spaghetti squash and chicken to perfection. Meanwhile, gather your baking sheet lined with foil, making clean-up a breeze. The foil will help the spaghetti squash roast evenly and capture all those delightful flavors as they meld together.
Step 2: Prepare the Spaghetti Squash
Carefully cut the large spaghetti squash in half lengthwise using a sharp knife. Scoop out the seeds and stringy insides—you want a clean base for your filling. Once cleaned, place the squash halves skin-side down on the prepared baking sheet. It’s important that they’re facing down to prevent moisture from making them soggy while roasting.
Step 3: Season and Place the Chicken
Next, take the chicken breast and cut it into halves. Season both sides with salt and pepper to enhance their flavor. Lay the chicken pieces on the same baking sheet as the squash, ensuring they have enough space to cook evenly. The chicken will absorb some of the flavors from the squash as they bake together, creating delightful synergy.
Step 4: Bake the Squash and Chicken
Slide the baking sheet into the oven and bake both the Pesto Chicken Stuffed Spaghetti Squash and chicken for about 45 minutes. After 30 minutes, it’s a good time to check the chicken to ensure it’s fully cooked—juices should run clear when pierced. The squash will be done when it feels tender and can easily be scraped into noodle-like strands with a fork.
Step 5: Scrape the Squash into Strands
Once cooked, remove the spaghetti squash and chicken from the oven. Let them cool briefly, then use a fork to scrape the flesh of the squash into strands. This process transforms the squash into a pasta-like texture, which is perfect for holding all the flavors of the filling. Set the strands aside in a large mixing bowl while you prepare to combine them with the chicken.
Step 6: Combine Chicken, Squash, and Pesto
Dice the cooked chicken into bite-sized pieces and add it to the bowl with the spaghetti squash strands. Pour in the pesto sauce, stirring everything together until well combined. This is where the magic happens—each strand will be coated in the vibrant flavors of your homemade (or store-bought) pesto, making each bite utterly delicious.
Step 7: Stuff the Squash Halves
Spoon the chicken and pesto mixture back into the hollowed spaghetti squash halves, generously filling each one. Make sure to pack it neatly, so every bite is packed with flavor. This step not only looks visually appealing but also ensures you get a hearty serving in each squash boat when it’s time to dig in.
Step 8: Top with Cheeses and Broil
Sprinkle the mozzarella and parmesan cheese over the stuffed spaghetti squash. This cheesy topping creates a delightful, melty layer that adds creaminess to your dish. Place the baking sheet back in the oven and switch to the broil setting. Broil for about 3-5 minutes, watching closely until the cheese is bubbly and golden brown.
Step 9: Serve and Enjoy Your Meal
Once the cheese has reached that perfect golden hue, carefully remove the baking sheet from the oven. Let the Pesto Chicken Stuffed Spaghetti Squash rest for a few minutes before serving. The aroma is irresistible, and each bite promises a delicious adventure that’s healthy and satisfying, making it a delightful dinner option for the whole family.

Make Ahead Options
These Pesto Chicken Stuffed Spaghetti Squash are fantastic for meal prep, allowing you to savor your favorite flavors while saving time during busy weeknights! You can cook and prepare the spaghetti squash and chicken up to 3 days in advance, storing them separately in airtight containers in the refrigerator. For optimal quality, refrigerate the cooked chicken and squash without the sauce, preventing them from becoming soggy. When you’re ready to enjoy, simply combine the squash and chicken with pesto and cheese, fill the squash halves, and broil them until the cheese is bubbly and golden—it’s just as delicious as when freshly made, minimizing your effort while maximizing flavor!
What to Serve with Pesto Chicken Stuffed Spaghetti Squash
Looking to create a delightful meal that sings of fresh flavors and comforting warmth?
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Crispy Side Salad: A crisp, mixed green salad topped with cherry tomatoes and balsamic vinaigrette adds refreshing crunch and balances the rich flavors of the squash.
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Garlic Breadsticks: Soft, buttery breadsticks with a hint of garlic create a perfect opportunity to soak up any leftover pesto sauce from the dish, making every bite unforgettable.
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Roasted Veggies: A medley of seasoned roasted vegetables like zucchini, bell peppers, and carrots can amplify the dish’s flavors while adding vibrant, nutritious color to your plate.
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Creamy Cauliflower Mash: Smooth and rich, cauliflower mash mimics traditional mashed potatoes and provides a comforting, low-carb alternative, enhancing the overall meal experience.
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Sautéed Spinach with Garlic: Lightly sautéed spinach with aromatic garlic brings a nutritious and flavorful green side that complements the pesto chicken beautifully.
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Sweet Potato Wedges: Crispy, oven-roasted sweet potato wedges offer a subtly sweet contrast to the savory stuffed squash, balancing flavors deliciously.
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Lemon Sparkling Water: Refreshing lemon sparkling water adds a splash of zest and brightness, cleansing the palate and pairing perfectly with the richness of the dish.
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Chocolate Mousse: Round off your meal with a light and airy chocolate mousse that provides a decadent yet satisfying finish, keeping it sweet without feeling heavy.
Let your dinner table bloom with these delightful companions to the Pesto Chicken Stuffed Spaghetti Squash for a truly loving gathering!
Pesto Chicken Stuffed Spaghetti Squash Variations
Feel free to transform this dish into your family’s next favorite meal with these fun and delicious modifications!
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Protein Swap: Substitute chicken with cooked shrimp or turkey for a unique twist. Both options lend a different flavor profile while keeping the dish satisfying.
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Veggie Boost: Add grilled zucchini or spinach to the filling for extra nutrition and vibrant color. Mixing in more veggies not only enhances the health factor but also adds delightful textures.
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Vegan Friendly: Replace chicken with chickpeas and use nutritional yeast in place of cheese for a satisfying vegan option. This alternative is packed with protein and flavor while being entirely plant-based.
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Cheese Lovers: Mix in ricotta cheese along with mozzarella for a creamier texture. The ricotta adds a lovely richness, making each bite indulgent and flavorful.
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Spicy Kick: Add red pepper flakes to the pesto or include some diced jalapeños in the filling for those who like a bit of heat. This spicy touch turns the dish into a flavorful fiesta for your taste buds!
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Herb Infusion: Elevate the flavor with additional herbs like basil or sun-dried tomatoes incorporated into the filling. These additions will provide a fresh aromatic note that dances on your palate.
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Different Squash: Switch spaghetti squash for bell peppers or zucchini boats if you want a different base entirely. Each vegetable brings its own flavor, providing a unique eating experience every time you make it!
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Saucy Goodness: Drizzle with a homemade balsamic glaze for an extra touch of flavor at serving. This sweet and tangy addition will impress your family and elevate the dish to the next level.
For more delicious ideas, check out this Cheesy Chicken Crescent or explore the vibrant flavors in my Cajun Chicken Sloppy dish!
Expert Tips for Pesto Chicken Stuffed Spaghetti Squash
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Choose the Right Squash: Opt for a spaghetti squash that feels heavy for its size for the best flavor. A fresh squash ensures a delightful meal.
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Avoid Overcooking: Check both the squash and chicken periodically while baking. Spaghetti squash should be tender, and chicken needs to be fully cooked for the best texture.
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Customize Your Pesto: If time allows, make homemade pesto for richer flavors. Use store-bought pesto to save time without sacrificing taste.
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Add Extra Veggies: Incorporate roasted peppers or spinach into the filling for added nutrition and a pop of color. This also enhances the overall texture of the dish.
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Rest Before Serving: Allow the stuffed squash to rest for a few minutes after broiling. This helps the flavors meld and makes it easier to scoop and serve the Pesto Chicken Stuffed Spaghetti Squash.
How to Store and Freeze Pesto Chicken Stuffed Spaghetti Squash
Fridge: Store the cooked Pesto Chicken Stuffed Spaghetti Squash in an airtight container for up to 3-4 days. Make sure it’s completely cooled before sealing to maintain freshness.
Freezer: For longer storage, freeze the stuffed spaghetti squash in a freezer-safe container or heavy-duty freezer bag for up to 3 months. Thaw overnight in the refrigerator before reheating.
Reheating: To reheat, simply warm it in the microwave or place in a preheated oven at 350°F (175°C) for about 20-25 minutes until heated through, ensuring that the flavors of the pesto chicken filling come alive again.

Pesto Chicken Stuffed Spaghetti Squash Recipe FAQs
What should I look for when selecting spaghetti squash?
Absolutely! When selecting spaghetti squash, choose one that feels heavy for its size. Look for a hard shell with a bright yellow color, avoiding any with dark spots all over, which may indicate overripeness.
How long can I store the cooked Pesto Chicken Stuffed Spaghetti Squash in the fridge?
You can store the cooked Pesto Chicken Stuffed Spaghetti Squash in an airtight container for up to 3-4 days. Be sure the squash is completely cooled before sealing to retain its freshness and flavor.
Can I freeze the Pesto Chicken Stuffed Spaghetti Squash, and if so, how?
Yes, you can freeze the stuffed spaghetti squash! First, allow it to cool completely, then place it in a freezer-safe container or heavy-duty freezer bag. It can be stored for up to 3 months. When you’re ready to eat, simply thaw it overnight in the fridge and reheat it in the microwave or bake in a preheated oven at 350°F (175°C) for about 20-25 minutes, ensuring it’s warmed through.
What if my chicken isn’t cooked thoroughly after baking?
If your chicken isn’t fully cooked after the baking time, it’s important to continue cooking until it reaches an internal temperature of 165°F (74°C). You can return it to the oven for additional 5-10 minutes or use a meat thermometer to double-check. It’s always best to ensure chicken is cooked thoroughly for safety!
Is this dish suitable for my family with dairy allergies?
Very! This Pesto Chicken Stuffed Spaghetti Squash can be made dairy-free by substituting mozzarella and parmesan with dairy-free alternatives. Additionally, using nutritional yeast can provide a cheesy flavor without dairy, making it a great option for those with lactose intolerance or dairy allergies.
Can I use store-bought pesto instead of homemade?
Of course! Using store-bought pesto is a fantastic time-saver, and it can still deliver a delicious flavor. Just make sure to check the ingredients for any allergens or additives if you’re cooking for someone with dietary restrictions.

Delicious Pesto Chicken Stuffed Spaghetti Squash Recipe
Ingredients
Equipment
Method
- Preheat your oven to 375°F (190°C).
- Cut the large spaghetti squash in half lengthwise and scoop out the seeds.
- Season the chicken breast with salt and pepper and lay it on the baking sheet.
- Bake both the squash and chicken for about 45 minutes.
- Remove from the oven and let them cool briefly.
- Scrape the spaghetti squash flesh into strands and combine them with diced chicken and pesto sauce.
- Spoon the chicken and pesto mixture back into the hollowed spaghetti squash halves.
- Sprinkle mozzarella and Parmesan cheese over the filled squashes and broil for 3-5 minutes.
- Let it rest for a few minutes before serving.

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