As the leaves turn and the air fills with the warm scent of cinnamon, my kitchen transforms into a cozy autumn retreat. That’s when my love for baking really shines, especially with these Apple Crumble Cupcakes—a heartfelt tribute to the season that brings us comfort. Imagine sinking your teeth into a moist cupcake bursting with cinnamon-spiced apples, topped with a crunchy crumble that makes each bite feel like a warm hug. What’s more, this recipe is perfect for any gathering, whether you’re hosting a friendly fall get-together or simply indulging in a sweet treat after a long day. Plus, with easy variations for gluten-free and vegan options, everyone can join in on the fun! Are you ready to fill your home with the irresistible aroma of homemade sweetness?

Why are Apple Crumble Cupcakes a Must-Bake?
Warm, Inviting Aroma: The moment these Apple Crumble Cupcakes are baking, your home will fill with the cozy scents of cinnamon and baked apples, instantly elevating your fall vibe.
Deliciously Versatile: Feel free to experiment! Whether you want to enjoy gluten-free options or go vegan, this recipe accommodates everyone’s needs without sacrificing flavor.
Crowd-Pleasing Delight: Perfect for gatherings, these cupcakes are a hit at afternoon teas or holiday parties, ensuring smiles all around.
Quick & Easy: Whip up a batch in no time—great for those busy days when you crave something sweet without the fuss.
Comfort in Every Bite: Soft, moist cupcakes paired with a crunchy crumble offer a delightful textural contrast you’ll love. You might also enjoy them with a drizzle of caramel or a dusting of powdered sugar to elevate your experience. Embrace the season with every delectable bite!
Apple Crumble Cupcakes Ingredients
For the Cupcakes
• All-purpose flour – Provides the structure you need; for a gluten-free option, use a gluten-free flour blend.
• Light brown sugar – Adds sweetness and helps retain moisture in the cupcakes.
• Ground cinnamon – Brings warmth and enhances the apple flavor beautifully.
• Ground nutmeg – A little spice that complements the apple filling perfectly.
• Unsalted butter (softened) – Contributes richness and flavor to the batter.
• Eggs – Essential for binding the ingredients together and giving structure.
• Vanilla extract – Deepens the overall flavor of the cupcakes.
• Sour cream or yogurt – Keeps the cupcakes moist and tender.
• Milk – Adjusts the batter’s consistency for the perfect texture.
• Baking powder – Helps the cupcakes rise and achieve a fluffy texture.
• Baking soda – Works alongside baking powder for an extra lift.
• Salt – Enhances the overall flavor of the cupcakes.
For the Apple Filling
• Apples (Honeycrisp, Gala, Fuji) – Choose your favorite variety to add natural sweetness and flavor; they provide moisture and a lovely bite.
• Granulated sugar – Sweetens the apple filling for that comforting taste.
• Lemon juice – Brightens the apples and balances the sweetness, enhancing flavor.
For the Crumble Topping
• Cold unsalted butter – Key for achieving a crispy, buttery crumble texture; remember to cube it for best results.
• All-purpose flour – Provides the base for the crumbly topping; a gluten-free blend can work here too.
• Light brown sugar – Adds sweetness and a hint of toasty flavor to the crumble.
• Ground cinnamon – Ties the topping flavors back to the familiar apple crumble theme.
• Optional chopped nuts (e.g., walnuts or pecans) – Sprinkle for added crunch and flavor if desired.
Optional Garnishes
• Caramel sauce – Drizzle on top for an indulgent finish; it pairs wonderfully with the apple flavor.
• Powdered sugar – Dust lightly for a sweet and pretty presentation.
Get ready to savor the delightful mix of flavors packed into these Apple Crumble Cupcakes; they’re bound to be a new favorite!
Step‑by‑Step Instructions for Apple Crumble Cupcakes
Step 1: Prepare the Crumble Topping
In a large mixing bowl, whisk together 1 cup of all-purpose flour, 1/2 cup of light brown sugar, 1 teaspoon of ground cinnamon, and 1/4 teaspoon of ground nutmeg. Cut in 1/2 cup of cold unsalted butter, cubed, using a pastry cutter or your fingers until the mixture resembles coarse crumbs. Refrigerate the crumble topping for about 30 minutes while you prepare the cupcake batter.
Step 2: Make the Apple Filling
Peel, core, and dice 2 to 3 apples into small pieces, depending on your preference. In a separate bowl, combine the diced apples with 1/4 cup of granulated sugar, 1 tablespoon of lemon juice, 1/2 teaspoon of ground cinnamon, and 1 tablespoon of all-purpose flour. Mix well to ensure the apples are evenly coated, then set aside to allow the flavors to meld while you prepare the batter.
Step 3: Prepare the Cupcake Batter
Preheat your oven to 350°F (175°C) and line a muffin tin with paper cupcake liners. In a large bowl, whisk together 1 1/2 cups of all-purpose flour, 1 teaspoon of baking powder, 1/2 teaspoon of baking soda, and 1/4 teaspoon of salt. In another bowl, cream 1/2 cup of softened unsalted butter and 1 cup of light brown sugar until light and fluffy. Add 2 large eggs and 2 teaspoons of vanilla extract, mixing until well combined.
Step 4: Combine Wet and Dry Ingredients
Alternately mix in the dry ingredients with 1/2 cup of sour cream and 1/4 cup of milk, starting and ending with the dry mixture. Stir gently until just combined; be careful not to overmix the batter. The mixture should be smooth and thick, yet pourable, ready to create the delightful base of your Apple Crumble Cupcakes.
Step 5: Assemble and Bake
Spoon the cupcake batter into the lined muffin tin, filling each cup about halfway. Add a generous spoonful of the apple filling on top of each filled cupcake liner, followed by a layer of the chilled crumble topping. Bake in the preheated oven for 20-25 minutes, or until a toothpick inserted into the center comes out clean and the tops are lightly golden.
Step 6: Cool and Garnish
Once baked, remove the cupcakes from the oven and let them cool in the tin for 5-10 minutes before transferring to a wire rack to cool completely. If desired, drizzle cooled cupcakes with caramel sauce and dust lightly with powdered sugar for an extra special touch. Enjoy the warm and inviting flavors of your homemade Apple Crumble Cupcakes!

What to Serve with Apple Crumble Cupcakes?
Transform your sweet treat into a delightful full meal by pairing these cupcakes with the perfect accompaniments that balance and elevate every bite.
- Vanilla Ice Cream: A scoop of creamy vanilla ice cream melts beautifully over warm cupcakes, creating a luxurious dessert experience.
- Spiced Mashed Sweet Potatoes: The warmth of cinnamon and nutmeg in mashed sweet potatoes complements the flavors of the cupcakes, adding a savory contrast.
- Caramel Drizzle: Drizzle extra caramel over the cupcakes for an indulgent touch that enhances their rich apple flavor.
- Apple Cider: A glass of chilled spiced apple cider refreshes the palate, making for a cozy autumn drink pairing.
- Whipped Cream: Light and airy whipped cream adds a delightful creaminess, harmonizing with the cupcakes’ moist texture while visually stunning.
- Fall Salad: A mixed greens salad with cranberries and pecans introduces a refreshing crunch, balancing the sweetness of your dessert beautifully.
- Chai Latte: The warm spices in a chai latte echo those in the cupcakes, making a comforting drink that’s perfect for fall afternoons.
- Pumpkin Bread: For a seasonal twist, serve alongside slices of moist pumpkin bread, offering different textures while maintaining autumn flavors.
- Cheesecake Bars: Creamy cheesecake bars provide a rich element to your dessert spread, while their tanginess contrasts nicely with the sweet cupcakes.
- Pecan Pie: Slice up a classic pecan pie for a sweet family treat that adds decadence to your fall gathering, rounding out the dessert table.
How to Store and Freeze Apple Crumble Cupcakes
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Room Temperature: Store in an airtight container at room temperature for up to 3 days for optimal freshness.
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Fridge: If you live in a warm climate, keep the cupcakes in the fridge to prevent spoilage; they will last up to 5 days.
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Freezer: These delicious Apple Crumble Cupcakes can be frozen for up to 2 months. Wrap each cupcake tightly in plastic wrap, then place them in a freezer bag for best results.
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Reheating: To enjoy, thaw overnight in the fridge and warm in the oven at low heat for a few minutes before serving, ensuring the crumble stays crisp and delightful.
Expert Tips for Apple Crumble Cupcakes
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Chill the Butter: Always use cold unsalted butter for the crumble topping to achieve that perfect, crunchy texture.
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Don’t Overmix: Mix the cupcake batter gently; overmixing can result in dense, tough cupcakes. Treat them with love for a light, airy finish.
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Pick Quality Apples: Choose high-quality, fresh apples like Honeycrisp or Fuji for the best flavor and moisture in your Apple Crumble Cupcakes.
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Monitor Baking Time: Keep an eye on your cupcakes as they bake. Start checking around 20 minutes to avoid overbaking and keep them moist.
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Cool Before Garnishing: Allow your cupcakes to cool completely before adding any toppings, like caramel or powdered sugar, to prevent them from melting into a gooey mess.
Make Ahead Options
These Apple Crumble Cupcakes are fantastic for meal prep enthusiasts looking to save time during busy weeks! You can prepare the crumble topping and the apple filling up to 24 hours in advance. Simply make the crumble as directed, refrigerate it in an airtight container, and do the same for the apple filling (to prevent browning, mix in the lemon juice right before using). When you’re ready to bake, combine the cupcake batter and layer it with the prepped fillings before baking. This way, you’ll enjoy fresh, homemade Apple Crumble Cupcakes with just minimal effort, and they’ll taste just as delicious as when made fresh!
Apple Crumble Cupcakes Variations and Substitutions
Feel free to play around with these scrumptious twists to make your Apple Crumble Cupcakes uniquely yours!
- Gluten-Free: Use a gluten-free flour blend in place of all-purpose flour for a delightful, crumbly texture that everyone can enjoy.
- Vegan: Substitute eggs with flax eggs (1 tablespoon ground flaxseed + 2.5 tablespoons water per egg) and use plant-based butter and milk.
- Nutty Crumble: Add chopped walnuts or pecans to the crumble for an added crunch and lovely nutty flavor. It’s a gentle twist that enhances texture.
- Spiced Variety: Experiment with warming spices like ground ginger or cloves to give your cupcakes an extra layer of flavor; just a pinch can transform the overall taste!
- Cream Cheese Frosting: For a lavish touch, top your cupcakes with cream cheese frosting instead of the traditional crumble, bringing a rich and tangy sweetness.
- Mini Cupcakes: Make mini versions for bite-sized delights that are perfect for sharing or grazing at parties, capturing the essence of fall in a smaller package.
- Syrupy Sweet: Drizzle warm maple syrup over the tops for an irresistible sweet finish that complements the apple flavor perfectly.
- Applesauce Swap: Replace some of the butter with unsweetened applesauce for a lighter, moist cupcake, still bursting with flavor!
Ready to indulge? These variations will keep your kitchen buzzing and your family excited! And if you love the combination of apples and baked goods, you might want to try my delicious Pumpkin Cupcakes Brown for another festive twist. Enjoy the wonderful world of baking!

Apple Crumble Cupcakes Recipe FAQs
What type of apples should I use for the filling?
You can use any variety of apples you prefer, but Honeycrisp, Gala, or Fuji work beautifully for their balance of sweetness and tartness. Choose firm apples that are fresh and crispy for the best results. The texture will remain intact during baking, giving you that delightful bite in each cupcake.
How should I store the Apple Crumble Cupcakes?
Store the cupcakes in an airtight container at room temperature for up to 3 days. If it’s warm in your area, refrigeration can help—these cupcakes will last up to 5 days when kept cold. Make sure they’re completely cooled before storing to maintain their moisture and freshness.
Can I freeze Apple Crumble Cupcakes?
Absolutely! To freeze, wrap each fully cooled cupcake tightly in plastic wrap, then place them in a freezer bag. They can be frozen for up to 2 months. When you’re ready to enjoy them, thaw overnight in the fridge and warm in the oven at low heat for about 5-10 minutes; this helps keep the crumble topping crispy.
What should I do if my crumble topping is too wet?
If your crumble topping feels too wet or crumbly instead of crumbly, ensure that you’re using cold butter and mixing just until you achieve a coarse texture. If it’s already too wet, try adding an additional tablespoon of flour to the mixture to absorb the excess moisture. You want it to be crumbly but not soggy for that perfect crunchy topping!
Are these cupcakes safe for my gluten-intolerant friends?
Yes, you can easily make these Apple Crumble Cupcakes gluten-free! Simply substitute all-purpose flour with a certified gluten-free flour blend—it typically works well in baking. Make sure to check all additional ingredients like baking powder and vanilla extract to ensure they are gluten-free. Everyone deserves to enjoy these lovely fall cupcakes!
Can I make these cupcakes vegan?
Certainly! For a vegan version, substitute the eggs with flax eggs (1 tablespoon of ground flaxseed mixed with 2.5 tablespoons of water for each egg), and use plant-based butter and dairy-free yogurt or sour cream in the batter. You can also replace milk with almond or oat milk. These adjustments retain the cupcakes’ moistness and flavor!

Irresistible Apple Crumble Cupcakes for Cozy Fall Days
Ingredients
Equipment
Method
- In a large mixing bowl, whisk together 1 cup of all-purpose flour, 1/2 cup of light brown sugar, 1 teaspoon of ground cinnamon, and 1/4 teaspoon of ground nutmeg. Cut in 1/2 cup of cold unsalted butter until the mixture resembles coarse crumbs. Refrigerate for 30 minutes.
- Peel, core, and dice 2-3 apples. Combine with 1/4 cup of granulated sugar, 1 tablespoon of lemon juice, 1/2 teaspoon of ground cinnamon, and 1 tablespoon of all-purpose flour. Mix well and set aside.
- Preheat your oven to 350°F and line a muffin tin with paper liners. In another bowl, whisk together 1.5 cups of all-purpose flour, 1 teaspoon of baking powder, 1/2 teaspoon of baking soda, and 1/4 teaspoon of salt. Cream 1/2 cup of softened unsalted butter and 1 cup of light brown sugar until fluffy. Add 2 eggs and 2 teaspoons of vanilla, mixing well.
- Mix in the dry ingredients alternately with 1/2 cup of sour cream and 1/4 cup of milk, starting and ending with dry ingredients. Stir gently until just combined.
- Spoon batter into muffin tin, filling halfway. Add apple filling, then top with crumble. Bake for 20-25 minutes until a toothpick comes out clean.
- Cool in the tin for 5-10 minutes, then transfer to a wire rack. If desired, drizzle with caramel sauce and dust with powdered sugar.

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